论文标题
针对压缩冷冻的离子束扫描电子显微镜的有针对性的采样策略
A Targeted Sampling Strategy for Compressive Cryo Focused Ion Beam Scanning Electron Microscopy
论文作者
论文摘要
冷冻浓缩的离子梁扫描电子显微镜(冷冻FIB-SEM)可以通过切片和视图机制对生物标本进行三维和纳米级成像。但是,FIB-SEM实验受到缓慢(通常是几个小时)的采集过程的限制,并且对梁敏感样本施加的高电子剂量可能会造成损害。在这项工作中,我们提出了一种压缩传感变体的冷冻FIB-SEM,能够降低操作电子剂量和增加速度。我们提出了两种有针对性的采样(TS)策略,以利用上一个样本层的重建图像作为设计下一个子采样掩码的先验。我们的图像恢复基于盲目的贝叶斯词典学习方法,即β过程因子分析(BPFA)。由于我们基于BPFA的超快速实施,该方法在实验上可行。对人工压缩FIB-SEM测量的模拟验证了提出的方法的成功:可将操作电子剂量降低20次。这些方法对低温FIB-SEM社区具有很大的影响,其中没有光束损伤的光束敏感生物材料的成像至关重要。
Cryo Focused Ion-Beam Scanning Electron Microscopy (cryo FIB-SEM) enables three-dimensional and nanoscale imaging of biological specimens via a slice and view mechanism. The FIB-SEM experiments are, however, limited by a slow (typically, several hours) acquisition process and the high electron doses imposed on the beam sensitive specimen can cause damage. In this work, we present a compressive sensing variant of cryo FIB-SEM capable of reducing the operational electron dose and increasing speed. We propose two Targeted Sampling (TS) strategies that leverage the reconstructed image of the previous sample layer as a prior for designing the next subsampling mask. Our image recovery is based on a blind Bayesian dictionary learning approach, i.e., Beta Process Factor Analysis (BPFA). This method is experimentally viable due to our ultra-fast GPU-based implementation of BPFA. Simulations on artificial compressive FIB-SEM measurements validate the success of proposed methods: the operational electron dose can be reduced by up to 20 times. These methods have large implications for the cryo FIB-SEM community, in which the imaging of beam sensitive biological materials without beam damage is crucial.