论文标题

识别苦和鲜味肽中的顺序残留模式

Identifying sequential residue patterns in bitter and umami peptides

论文作者

Dutta, Arghya, Bereau, Tristan, Vilgis, Thomas A.

论文摘要

起源于食品蛋白的肽的主要结构会影响其味道。但是,将主要结构连接到味道很困难,因为肽序列空间的大小随肽长度的增加而呈指数增加,而肽味的实验标记的数据仍然很少。我们提出了一种方法,该方法将序列空间粗糙,以减少其大小,并系统地识别已知苦涩和鲜味肽中最常见的粗粒粒度残基模式。我们通过执行广泛的样本外测试来选择最佳模式。当与基线肽,所有疏水残基和鲜血的肽肽进行比较时,最佳模式更好地代表了苦味和鲜味的肽,以及所有带负电荷残基的蛋白肽,以及带有随机选择残基的肽。我们的方法通过提供通用的,粗粒的苦味和鲜味的残基模式来补充定量结构 - 活动关系方法,这些方法可以帮助在蛋白质中定位短苦或鲜味的片段并设计新的鲜味蛋白质肽。

The primary structures of peptides, originating from food proteins, affect their taste. Connecting primary structure to taste, however, is difficult because the size of the peptide sequence space increases exponentially with increasing peptide length, while experimentally-labeled data on peptides' tastes remain scarce. We propose a method that coarse-grains the sequence space to reduce its size and systematically identifies the most common coarse-grained residue patterns found in known bitter and umami peptides. We select the optimal patterns by performing extensive out-of-sample tests. The optimal patterns better represent the bitter and umami peptides when compared against baseline peptides, bitter peptides with all hydrophobic residues and umami peptides with all negatively charged residues, and peptides with randomly-chosen residues. Our method complements quantitative structure--activity relationship methods by offering generic, coarse-grained bitter and umami residue patterns that can aid in locating short bitter or umami segments in a protein and in designing new umami peptides.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源