论文标题

基于图的特征在计算机辅助诊断中用于胃癌的组织病理学图像分类

Application of Graph Based Features in Computer Aided Diagnosis for Histopathological Image Classification of Gastric Cancer

论文作者

Zhang, Haiqing, Li, Chen, Ai, Shiliang, Chen, Haoyuan, Zheng, Yuchao, Li, Yixin, Li, Xiaoyan, Sun, Hongzan, Huang, Xinyu, Grzegorzek, Marcin

论文摘要

胃癌检测的黄金标准是胃组织病理学图像分析,但现有的组织病理学检测和诊断存在某些缺点。在本文中,基于计算机辅助诊断系统的研究,基于图的特征应用于胃癌组织病理学显微镜图像分析,分类器用于对良性细胞的胃癌细胞进行分类。首先,进行图像分割,并在找到区域后,使用K-均值方法提取细胞核,绘制最小跨树(MST),并提取基于图的MST特征。然后将基于图的功能放入分类器中进行分类。在这项研究中,在组织分割阶段进行了不同的分割方法,其中包括级别,OTSU阈值,分水岭,Segnet,U-NET和Trans-U-NET分割;在特征提取阶段比较了基于图形的特征​​,红色,绿色,蓝色特征,灰色级共存在矩阵特征,定向梯度特征的直方图和本地二进制图案特征在特征提取阶段进行比较;在分类器阶段比较了径向基础功能(RBF)支持向量机(SVM),线性SVM,人工森林,随机森林,K-Nearestneighbor,VGG16和Inpertion-V3。已经发现,使用U-NET来分割组织区域,然后提取基于图形的特征​​,最后使用RBF SVM分类器为94.29%的最佳结果提供了最佳的结果。

The gold standard for gastric cancer detection is gastric histopathological image analysis, but there are certain drawbacks in the existing histopathological detection and diagnosis. In this paper, based on the study of computer aided diagnosis system, graph based features are applied to gastric cancer histopathology microscopic image analysis, and a classifier is used to classify gastric cancer cells from benign cells. Firstly, image segmentation is performed, and after finding the region, cell nuclei are extracted using the k-means method, the minimum spanning tree (MST) is drawn, and graph based features of the MST are extracted. The graph based features are then put into the classifier for classification. In this study, different segmentation methods are compared in the tissue segmentation stage, among which are Level-Set, Otsu thresholding, watershed, SegNet, U-Net and Trans-U-Net segmentation; Graph based features, Red, Green, Blue features, Grey-Level Co-occurrence Matrix features, Histograms of Oriented Gradient features and Local Binary Patterns features are compared in the feature extraction stage; Radial Basis Function (RBF) Support Vector Machine (SVM), Linear SVM, Artificial Neural Network, Random Forests, k-NearestNeighbor, VGG16, and Inception-V3 are compared in the classifier stage. It is found that using U-Net to segment tissue areas, then extracting graph based features, and finally using RBF SVM classifier gives the optimal results with 94.29%.

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