论文标题

与批处理效果清除胸部CT扫描和可解释的人工智能的肺炎肺炎的准确诊断和快速诊断

Accurate and Rapid Diagnosis of COVID-19 Pneumonia with Batch Effect Removal of Chest CT-Scans and Interpretable Artificial Intelligence

论文作者

Modegh, Rassa Ghavami, Hamidi, Mehrab, Masoudian, Saeed, Mohseni, Amir, Lotfalinezhad, Hamzeh, Kazemi, Mohammad Ali, Moradi, Behnaz, Ghafoori, Mahyar, Motamedi, Omid, Pournik, Omid, Rezaei-Kalantari, Kiara, Manteghinezhad, Amirreza, Javanmard, Shaghayegh Haghjooy, Nezhad, Fateme Abdoli, Enhesari, Ahmad, Kheyrkhah, Mohammad Saeed, Eghtesadi, Razieh, Azadbakht, Javid, Aliasgharzadeh, Akbar, Sharif, Mohammad Reza, Khaleghi, Ali, Foroutan, Abbas, Ghanaati, Hossein, Dashti, Hamed, Rabiee, Hamid R.

论文摘要

COVID-19是一种具有高传播率的病毒,需要快速鉴定受感染患者以减少疾病的传播。当前的金标准测试,反转录聚合酶链反应(RT-PCR)具有很高的假阴性率。从CT-Scan图像诊断为更准确的替代方案,其挑战是将Covid-19与其他肺炎疾病区分开。人工智能可以帮助放射学家和医生加速诊断过程,提高其准确性并衡量疾病的严重程度。我们设计了一个新的可解释的深神经网络,以区分健康的人,Covid-19患者以及其他轴向肺CT-CT扫描图像的患者。我们的模型还检测到感染区域并计算感染肺体积的百分比。我们首先预处理图像以消除不同设备的批处理效应,然后采用了一种弱监督的方法来训练模型,而无需对受感染部件有任何标签。我们在来自6个不同医疗中心的3359个样本的大型数据集上培训并评估了该模型。该模型的敏感性为97.75%和98.15%,在将健康的人与患病患者与其他疾病中分开的特异性分别为87%和81.03%。它也证明了来自6个不同医疗中心的1435个样品的性能相似,这证明了其普遍性。该模型在大型不同数据集上的性能,其普遍性和解释性使其适合用作可靠的诊断系统。

COVID-19 is a virus with high transmission rate that demands rapid identification of the infected patients to reduce the spread of the disease. The current gold-standard test, Reverse-Transcription Polymerase Chain Reaction (RT-PCR), has a high rate of false negatives. Diagnosing from CT-scan images as a more accurate alternative has the challenge of distinguishing COVID-19 from other pneumonia diseases. Artificial intelligence can help radiologists and physicians to accelerate the process of diagnosis, increase its accuracy, and measure the severity of the disease. We designed a new interpretable deep neural network to distinguish healthy people, patients with COVID-19, and patients with other pneumonia diseases from axial lung CT-scan images. Our model also detects the infected areas and calculates the percentage of the infected lung volume. We first preprocessed the images to eliminate the batch effects of different devices, and then adopted a weakly supervised method to train the model without having any tags for the infected parts. We trained and evaluated the model on a large dataset of 3359 samples from 6 different medical centers. The model reached sensitivities of 97.75% and 98.15%, and specificities of 87% and 81.03% in separating healthy people from the diseased and COVID-19 from other diseases, respectively. It also demonstrated similar performance for 1435 samples from 6 different medical centers which proves its generalizability. The performance of the model on a large diverse dataset, its generalizability, and interpretability makes it suitable to be used as a reliable diagnostic system.

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