论文标题
与交联电动机的细胞骨架细丝的显式和平均场模型的比较
Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors
论文作者
论文摘要
在细胞中,细胞骨骼细丝网络负责细胞运动,生长和分裂。细胞骨架中的细丝是通过交联的分子电动机来驱动和组织的。在重构的细胞骨架系统中,运动活性负责远程平衡现象,例如主动应力,自组织的流动和自发性列表产生。电动机和细丝之间的微观相互作用如何导致大规模动力学尚未完全理解。为了从运动丝相互作用构建以预测细胞骨架系统的批量行为,需要进行更多的计算高效技术,以建模运动丝相互作用。在这里,我们得出了与灯丝对结合和行走的交联电动机的显式和连续模型的粗粒层次结构。我们比较了不同模型的稳态运动分布和电动机诱导的细丝运动,并分析了它们的计算成本。这三个模型在快速运动结合动力学的极限上均吻合。与显式或连续密度的模拟相比,将电动机密度速度的截断矩膨胀速度提高了$ 10^3 $ - $ 10^6 $,这表明一种方法可以更有效地模拟大型网络。这些工具促进了在微米到毫米长度尺度上进一步研究运动丝网络。
In cells, cytoskeletal filament networks are responsible for cell movement, growth, and division. Filaments in the cytoskeleton are driven and organized by crosslinking molecular motors. In reconstituted cytoskeletal systems, motor activity is responsible for far-from-equilibrium phenomena such as active stress, self-organized flow, and spontaneous nematic defect generation. How microscopic interactions between motors and filaments lead to larger-scale dynamics remains incompletely understood. To build from motor-filament interactions to predict bulk behavior of cytoskeletal systems, more computationally efficient techniques for modeling motor-filament interactions are needed. Here we derive a coarse-graining hierarchy of explicit and continuum models for crosslinking motors that bind to and walk on filament pairs. We compare the steady-state motor distribution and motor-induced filament motion for the different models and analyze their computational cost. All three models agree well in the limit of fast motor binding kinetics. Evolving a truncated moment expansion of motor density speeds the computation by $10^3$--$10^6$ compared to the explicit or continuous-density simulations, suggesting an approach for more efficient simulation of large networks. These tools facilitate further study of motor-filament networks on micrometer to millimeter length scales.