论文标题

使用胸部X射线识别大流行的早期病例的异常检测方法

Anomaly Detection Approach to Identify Early Cases in a Pandemic using Chest X-rays

论文作者

Khan, Shehroz S., Khoshbakhtian, Faraz, Ashraf, Ahmed Bilal

论文摘要

目前的19日大流行现在已经被遏制,尽管以230万人类的生命为代价。在任何大流行中,关键阶段是对开发预防性治疗和策略的病例的早期发现。在Covid-19的情况下,几项研究表明,感染患者的胸部X射线照相图像显示出特征异常。但是,在给定的大流行时,这种ASCOVID-19,可能没有足够的数据来训练模型以实现其可靠检测。因此,在此问题上,监督分类不足,因为从感染者那里收集大量数据的时间可能会导致人类生命的丧失和预防性干预措施的延迟。因此,我们提出了将大流行中早期病例识别为一种异常检测问题的问题,其中健康患者的数据可获得,而对兴趣类别的培训数据(在我们的情况下为19)没有培训数据。为了解决这个问题,我们提出了几种无监督的深度学习方法,包括卷积和对抗训练的自动编码器。我们通过对仅(i)健康成年人的胸部X射线训练模型,以及(ii)健康和其他非卵巢-19肺炎的胸部X射线训练模型,在公开可用的数据集(COVIDX)上测试了两种设置,并检测到Covid-19作为异常。表现后3倍交叉验证,我们获得了0.765的ROC-AUC。这些结果非常令人鼓舞,并为确保未来大流行中的紧急准备的研究铺平了道路,尤其是可以从胸部X射线射线中检测到的。

The current COVID-19 pandemic is now getting contained, albeit at the cost of morethan2.3million human lives. A critical phase in any pandemic is the early detection of cases to develop preventive treatments and strategies. In the case of COVID-19,several studies have indicated that chest radiography images of the infected patients show characteristic abnormalities. However, at the onset of a given pandemic, such asCOVID-19, there may not be sufficient data for the affected cases to train models for their robust detection. Hence, supervised classification is ill-posed for this problem because the time spent in collecting large amounts of data from infected persons could lead to the loss of human lives and delays in preventive interventions. Therefore, we formulate the problem of identifying early cases in a pandemic as an anomaly detection problem, in which the data for healthy patients is abundantly available, whereas no training data is present for the class of interest (COVID-19 in our case). To solve this problem, we present several unsupervised deep learning approaches, including convolutional and adversarially trained autoencoder. We tested two settings on a publicly available dataset (COVIDx)by training the model on chest X-rays from (i) only healthy adults, and (ii) healthy and other non-COVID-19 pneumonia, and detected COVID-19 as an anomaly. Afterperforming3-fold cross validation, we obtain a ROC-AUC of0.765. These results are very encouraging and pave the way towards research for ensuring emergency preparedness in future pandemics, especially the ones that could be detected from chest X-rays

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